Sunday 24 November 2019

Quinacrine and Berberine as Antiviral Agents against Dengue and Zika Fever: In Silico Approach- Crimson Publishers

Quinacrine and Berberine as Antiviral Agents against Dengue and Zika Fever: In Silico Approach by Vivek Srivastava in OpenAccess Biostatistics & Bioinformatics: Crimson Publishers- Open Access Biostatistics & Bioinformatics journals


TDengue and Zika fever are mosquito-borne viral diseases that have rapidly spread in all over world. Currently there are no specific drugs for DENV and ZIKV infection. The recent outbreak of these viruses realized that there are major health risks, demands an enhanced surveillance and a need to develop novel drugs against them. Non-structural proteins NS5 and NS3 are essential for the replication of the flavi-viral RNA genome. Therefore its inhibition could be considered as a useful strategy for treatment of DENV and ZIKV infection. Quinacrine and Berberine had been docked with NS5-methyltransferase of Dengue virus and NS3 protein of ZIKV using Auto dock 4.2 tools. Quinacrine and Berberine showed binding affinity -6.83kcal/mol and -6.22kcal/mol with NS5-methyltransferase and -7.32kcal/mol and -8.03kcal/mol with NS3 protease of ZIKV, respectively. Observations discussion in review will be useful in designing single drug against both virus infections.

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Untargeted UPLC-MS Downstream Data Processing and Statistical Analysis - Illustrated by a Pilot Study on Cognitive Impairment- Crimson Publishers

Untargeted UPLC-MS Downstream Data Processing and Statistical Analysis - Illustrated by a Pilot Study on Cognitive Impairment by TANG Xingyu in Open Access Biostatistics & Bioinformatics: Crimson Publishers- Open Access Biostatistics & Bioinformatics journals


This article is to introduce the procedure of untargeted ultra-performance liquid chromatography-mass spectrometry(UPLC-MS) downstream data processing and statistical analysis, developed and optimized in Singapore Phenome Centre (SPC). The procedure is illustrated by a pilot study on cognitive impairment.

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Friday 15 November 2019

On the Efficacy of Chinese Herbs for Survival Rates of Breast Cancer Based on Taiwan’s National Health Insurance Research Database (Nhird)- Crimson Publishers

On the Efficacy of Chinese Herbs for Survival Rates of Breast Cancer Based on Taiwan’s National Health Insurance Research Database (Nhird) by Kun Chan Lan in Open Access Biostatistics & Bioinformatics: Crimson Publishers- Bioinformatics Open Access Journals



Our research employs statistical analysis based on a large national database to study the efficiency of Chinese herbs for improving survival rates of breast cancer. People who used the four categoriesof herbal formula (安神之劑, 袪寒之劑, 袪痰之劑, 產之劑) seem to live longer in our database.

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Structural Bioinformatics: A Brief Overview- Crimson Publishers

Structural Bioinformatics: A Brief Overview by Long Pei in Open Access Biostatistics & Bioinformatics: Crimson Publishers- Bioinformatics Open Access Journals



In the past decades, many advanced bio-technologies have accelerated frontier research to explore biological systems including cell, the basic unit of life. Experimental exploration of cellular environment, however, will be difficult as it requires not only huge labor efforts and costs but also large number of samples for reproducible research. With large volume of available biological data generated, bioinformatics becomes an important hybrid science subject to support systematic and comprehensive data storage, processing and analysis. In joint with statistics and algorithms, biological data such as DNA sequences have been more efficiently processed by bioinformatics methods. Unlike sequential data, biological structures are usually more dynamic and stochastic, thus, structural biology is more challenging a task for bioinformatics.

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